PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.138470.1
Common NameCsa_1G628000, LOC101217349
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family SRS
Protein Properties Length: 308aa    MW: 31146.6 Da    PI: 8.7366
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.138470.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702196.58.7e-61922574154
          DUF702   4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa..aeaaskrkrelkskkqsalsstklssaes 96 
                     g  +C+dCGnqakkdC+h+RCR CCksrgfdC+thvkstWvpaa+rrerq + aa+ + a  ++  +++  k++r   ++++++ s+t++s++ +
  Cucsa.138470.1  92 GVGTCHDCGNQAKKDCSHRRCRSCCKSRGFDCSTHVKSTWVPAARRRERQMMGAASDAAAGGTSsgSTSGGKKPRLI-ASQTTTNSHTSTSNTPT 185
                     5568*********************************************9999998887777663345555556554.44444444555544443 PP

          DUF702  97 kkeletss...........lPeevsseavfrcvrvssvdd....geeelaYqtavsigGhvfkGiLydqGlee 154
                     + ++++ss           lPe+++++avf+cvrv++v+     g +e+aYq++v+igGhvfkG+Lyd+G+e+
  Cucsa.138470.1 186 P-SFDASSaadmsskkakkLPEQIRAPAVFKCVRVTAVEGgtsgGGNEYAYQAVVKIGGHVFKGYLYDHGVEA 257
                     3.55555556677789999*******************9733335689**********************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051425.9E-5795256IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016231.9E-2595137IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016244.3E-24204255IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MWPSSRPLTI GYNHTPAPTP DMVGLMASGF GVGVSVLPLL SGLAPSSVGI EEANLMISRG  60
GGGDDGGGGI QFNGNNLDGF GILGGGSSLN SGVGTCHDCG NQAKKDCSHR RCRSCCKSRG  120
FDCSTHVKST WVPAARRRER QMMGAASDAA AGGTSSGSTS GGKKPRLIAS QTTTNSHTST  180
SNTPTPSFDA SSAADMSSKK AKKLPEQIRA PAVFKCVRVT AVEGGTSGGG NEYAYQAVVK  240
IGGHVFKGYL YDHGVEARDG FPMMSNLHLG DGGSTSSPVI DPADVYGSST TRGGGLAGGS  300
GYGNSIN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818070.0LN681807.1 Cucumis melo genomic scaffold, anchoredscaffold00024.
GenBankLN7132560.0LN713256.1 Cucumis melo genomic chromosome, chr_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011660164.10.0PREDICTED: protein LATERAL ROOT PRIMORDIUM 1-like
SwissprotQ94CK97e-72LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBLA0A0A0M0990.0A0A0A0M099_CUCSA; Transcription factor
STRINGGLYMA14G03900.14e-79(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2455933
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12330.22e-46Lateral root primordium (LRP) protein-related
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]